jielab / pageant Goto Github PK

analyze with the same setting but different name, the program will not restart but start in the middle part, and can not give out a report. Sometime, it will crash.

Maybe there's a problem with the QR code....with the previous code I had a "genotype list"...now that's the new output (attached)

can not found ..\temp\tmp*pageant\temp.log

The link to the windows executable has been blocked by Google. Can you provide an alternative download?

Hi! I tried to run the provided executable for MacOS on my M1 MacBook. The program starts and prints the following message

qt.qpa.fonts: Populating font family aliases took 381 ms. Replace uses of missing font family "Calibri" with one that exists to avoid this cost.

Then it opens a new window and does some work, staying at 100% CPU. But nothing visible happens even after 2h of waiting time.

Dear all,

there's still some issues running the last version for mac (05_12_2021).

**ERROR: Error: Failed to load dynlib/dll '/var/folders/yh/vg66y9fj70s8365nnh7464p40000gn/T/_MEIQGhQPY/libzbar.dylib'. Most probably this dynlib/dll was not found when the application was frozen., analysis falied.

OSError: dlopen(/var/folders/yh/vg66y9fj70s8365nnh7464p40000gn/T/_MEIQGhQPY/libzbar.dylib, 6): Library not loaded: /usr/local/opt/jpeg/lib/libjpeg.9.dylib

PyInstallerImportError: Failed to load dynlib/dll '/var/folders/yh/vg66y9fj70s8365nnh7464p40000gn/T/_MEIQGhQPY/libzbar.dylib'. Most probably this dynlib/dll was not found when the application was frozen.**

Attached the log file

Best.

Stefano

20210514103107.log

Running the last version for MAC (2021-05-10) the following warning is reported (and generates an empty genetic report file):
ImportError: Unable to find zbar shared library

Attached the log file

20210511153254.log

When trying to run against my own *.vcf.gz file and I receive this error near the beginning:

Traceback (most recent call last):
File "pageant.py", line 48, in main
File "src\decorator.py", line 41, in wrapper
File "src\decorator.py", line 27, in wrapper
File "src\modules.py", line 122, in recode_and_sex_impute
File "src\objects.py", line 271, in run_plink_cmd
src.objects.PLINKERROR: PlinkError:
Error: Multiple instances of '_' in sample ID

Full log attached:
20220131225931.log
.