Comments (20)
Using the last release I don't have installation problems now (I have Python 3.10.13). But I have the following error when I try to import autolens :
ImportError: cannot import name '_get_dtype' from 'scipy.sparse.linalg.interface' (c:\Users\andre\dottorato\HyperMetaLearning\.conda\lib\site-packages\scipy\sparse\linalg\interface.py)
Thank you again
from pyautolens.
ok now the import works.
Thank you!
from pyautolens.
HI~ I also get this error. This is due to the specific version of PyYAML required by autolens7.5.2. You should pip install autolens like this: pip install --no-deps autolens. And use "pip check" to check dependency and then install them separately with “--no-deps” except PyYAML. Finally pip install PyYAML==6.0 . It should be fixed~
from pyautolens.
Thank you Troy9748 for the solution! Please let me know Andrea if this fixes the problem or not.
I am working on a new release to fix this via pip
properly.. I will post here once its up.
from pyautolens.
Please could you try the new release of autolens and let me know if you have any issues:
https://github.com/Jammy2211/PyAutoLens/releases/tag/2023.9.18.4
pip install autolens==2023.9.18.4
from pyautolens.
Please could you try the new release of autolens and let me know if you have any issues:
https://github.com/Jammy2211/PyAutoLens/releases/tag/2023.9.18.4
pip install autolens==2023.9.18.4
I got this error.
INFO: customize UnixCCompiler
WARN: #### ['clang', '-DNDEBUG', '-fwrapv', '-O2', '-Wall', '-fPIC', '-O2', '-isystem', '/Users/mac/anaconda3/envs/autolens_test/include', '-fPIC', '-O2', '-isystem', '/Users/mac/anaconda3/envs/autolens_test/include'] #######
INFO: customize UnixCCompiler using build_clib
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-march=native)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils
creating /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks
INFO: compile options: '-c'
extra options: '-march=native'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -march=native) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-O3)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-O3'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -O3) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-Werror=switch)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-Werror=switch'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -Werror=switch) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-Werror)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-Werror'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -Werror) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.__init__[1794] : check requested baseline
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-msse)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-msse'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -msse) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-msse2)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-msse2'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -msse2) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.feature_test[1559] : testing feature 'SSE' with flags ()
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse.o.d) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.feature_test[1575] : testing failed
INFO: CCompilerOpt.feature_test[1559] : testing feature 'SSE2' with flags ()
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse2.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse2.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse2.o.d) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.feature_test[1575] : testing failed
INFO: CCompilerOpt.__init__[1803] : check requested dispatch-able features
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-msse3)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-msse3'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -msse3) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mssse3)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mssse3'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mssse3) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-msse4.1)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-msse4.1'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -msse4.1) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mpopcnt)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mpopcnt'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mpopcnt) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-msse4.2)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-msse4.2'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -msse4.2) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mavx)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mavx'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mavx) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.feature_test[1559] : testing feature 'AVX' with flags ()
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_avx.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_avx.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_avx.o.d) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.feature_test[1575] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mf16c)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mf16c'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mf16c) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mfma)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mfma'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mfma) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mavx2)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mavx2'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mavx2) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mavx512f -mno-mmx)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mavx512f -mno-mmx'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mavx512f -mno-mmx) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.cc_test_flags[1085] : testing flags (-mavx512cd)
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
extra options: '-mavx512cd'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/test_flags.o.d -mavx512cd) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.cc_test_flags[1089] : testing failed
INFO: CCompilerOpt.feature_test[1559] : testing feature 'AVX512CD' with flags ()
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_avx512cd.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_avx512cd.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_avx512cd.o.d) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.feature_test[1575] : testing failed
INFO: CCompilerOpt.feature_test[1559] : testing feature 'SSE42' with flags ()
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse42.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse42.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_sse42.o.d) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.feature_test[1575] : testing failed
INFO: CCompilerOpt.feature_test[1559] : testing feature 'SSSE3' with flags ()
INFO: C compiler: clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math
INFO: compile options: '-c'
WARN: CCompilerOpt.dist_test[636] : CCompilerOpt._dist_test_spawn[770] : Command (clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -fPIC -O2 -isystem /Users/mac/anaconda3/envs/autolens_test/include -ftrapping-math -c /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_ssse3.c -o /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_ssse3.o -MMD -MF /var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/tmpsccvu_5v/private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-build-env-tqpr7yez/overlay/lib/python3.11/site-packages/numpy/distutils/checks/cpu_ssse3.o.d) failed with exit status 1 output ->
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
WARN: CCompilerOpt.feature_test[1575] : testing failed
INFO: CCompilerOpt.__init__[1819] : initialize targets groups
INFO: CCompilerOpt.__init__[1821] : parse target group simd_test
INFO: CCompilerOpt._parse_target_tokens[2032] : skip targets (NEON ASIMD SSE2 XOP VSX VXE2 VXE (FMA3 AVX2) AVX512F SSE42 VSX4 VSX3 AVX512_SKX VX FMA4 VSX2) not part of baseline or dispatch-able features
INFO: CCompilerOpt.generate_dispatch_header[2365] : generate CPU dispatch header: (build/src.macosx-10.9-x86_64-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h)
WARN: CCompilerOpt.generate_dispatch_header[2374] : dispatch header dir build/src.macosx-10.9-x86_64-3.11/numpy/distutils/include does not exist, creating it
INFO: building 'mach' library
error: library mach has Fortran sources but no Fortran compiler found
INFO:
########### CLIB COMPILER OPTIMIZATION ###########
INFO: Platform :
Architecture: x64
Compiler : clang
CPU baseline :
Requested : 'min'
Enabled : none
Flags : none
Extra checks: none
CPU dispatch :
Requested : 'max -xop -fma4'
Enabled : none
Generated : none
INFO: CCompilerOpt.cache_flush[863] : write cache to path -> /private/var/folders/yv/w59wcbys51qcdprf8pgzr9140000gn/T/pip-install-swxcfc7x/scipy_9827642c15db419fa387a96f6c746c68/build/temp.macosx-10.9-x86_64-3.11/ccompiler_opt_cache_clib.py
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for scipy
Building wheel for future (setup.py) ... done
Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492024 sha256=cca6dc3689aff5987085f54f49e29cf9412f1eedce1b018ecd54ce17058001d2
Stored in directory: /Users/mac/Library/Caches/pip/wheels/da/19/ca/9d8c44cd311a955509d7e13da3f0bea42400c469ef825b580b
Successfully built SQLAlchemy timeout-decorator future
Failed to build xxhash scikit-image scipy
ERROR: Could not build wheels for xxhash, scikit-image, scipy, which is required to install pyproject.toml-based projects
from pyautolens.
What version of Python are you using?
from pyautolens.
Ok, you are on Python 3.11, which autolens does not support yet (I am hoping to add this this week, but probably won't be quick).
Are you able to use a conda
enviroment with Python 3.10?
from pyautolens.
What version of Python are you using?
Python 3.11.5
from pyautolens.
Based on your comment above you did eventually get it working with PYthon 3.11 (I guess theres no reason it shouldnt work once you're past dependency issues).
So feel free to update via that if you know how...
Strongly recommend you do update as nautilus
is awesome!
from pyautolens.
Based on your comment above you did eventually get it working with PYthon 3.11 (I guess theres no reason it shouldnt work once you're past dependency issues).
So feel free to update via that if you know how...
Strongly recommend you do update as
nautilus
is awesome!
Thanks!I have successfully installed the new version! Can wait to test nautilus~
from pyautolens.
Can you do a pip install scipy
and paste it here please, I suspect you're on too recent a version.
from pyautolens.
Sorry that should be pip show scipy
.
from pyautolens.
Name: scipy
Version: 1.11.2
Yes It is the last one.
Have I downgrade the scipy version?
from pyautolens.
ok try:
pip uninstall scipy
pip install scipy==1.10.0
from pyautolens.
I am running python 3.10 and autolens works with scipy 1.7.3
So try pip install scipy==1.7.3
after that if you still have an issue.
from pyautolens.
Great, I'll leave this open for a bit in case you have any other issues crop up :)
from pyautolens.
Great, I'll leave this open for a bit in case you have any other issues crop up :)
Hi, James! I try to use af.Nautilus rather than af.DynestyStatic and got this error:
2023-09-22 15:21:25,513 - autolens.interferometer.model.analysis - INFO - PRELOADS - Setting up preloads, may take a few minutes for fits using an inversion.
2023-09-22 15:21:25,514 - autogalaxy.analysis.analysis - INFO - PRELOADS - Setting up preloads, may take a few minutes for fits using an inversion.
2023-09-22 15:21:26,012 - autogalaxy.analysis.preloads - INFO - PRELOADS - Preloading failed as models gave too many exceptions, preloading therefore not used.
2023-09-22 15:21:26,015 - mass[sie]_source[bulge] - INFO - The output path of this fit is /home/liuxh/autolens_workspace-2023.7.5.2/output/interferometer/simple/mass[sie]_source[bulge]/e4d2008487b4f30db20c82ceb38496dd
2023-09-22 15:21:26,016 - mass[sie]_source[bulge] - INFO - Outputting pre-fit files (e.g. model.info, visualization).
2023-09-22 15:21:28,957 - mass[sie]_source[bulge] - INFO - Starting new Nautilus non-linear search (no previous samples found).
2023-09-22 15:21:28,960 - mass[sie]_source[bulge] - INFO - number of cores == 1
2023-09-22 15:21:28,961 - mass[sie]_source[bulge] - INFO - Creating multiprocessing Pool of size 1...
2023-09-22 15:21:28,963 - autofit.non_linear.parallel.sneaky - INFO - ... using multiprocessing
AttributeError Traceback (most recent call last)
Cell In[12], line 1
----> 1 result = search.fit(model=model, analysis=analysis)
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/autofit/non_linear/search/abstract_search.py:527, in NonLinearSearch.fit(self, model, analysis, info, bypass_nuclear_if_on)
520 self.pre_fit_output(
521 analysis=analysis,
522 model=model,
523 info=info,
524 )
526 if not self.paths.is_complete:
--> 527 result = self.start_resume_fit(
528 analysis=analysis,
529 model=model,
530 )
531 else:
532 result = self.result_via_completed_fit(
533 analysis=analysis,
534 model=model,
535 )
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/autofit/non_linear/search/abstract_search.py:643, in NonLinearSearch.start_resume_fit(self, analysis, model)
640 self.timer.start()
642 model.freeze()
--> 643 self._fit(
644 model=model,
645 analysis=analysis,
646 )
647 samples = self.perform_update(
648 model=model, analysis=analysis, during_analysis=False
649 )
651 result = analysis.make_result(
652 samples=samples,
653 )
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/autofit/non_linear/search/nest/nautilus/search.py:137, in Nautilus._fit(self, model, analysis)
135 else:
136 if not self.using_mpi:
--> 137 self.fit_multiprocessing(fitness=fitness, model=model, analysis=analysis)
138 else:
139 self.fit_mpi(fitness=fitness, model=model, analysis=analysis)
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/autofit/non_linear/search/nest/nautilus/search.py:230, in Nautilus.fit_multiprocessing(self, fitness, model, analysis)
204 """
205 Perform the non-linear search, using multiple CPU cores parallelized via Python's multiprocessing module.
206
(...)
222 the log likelihood the search maximizes.
223 """
224 with self.make_sneakier_pool(
225 fitness_function=fitness.call,
226 prior_transform=prior_transform,
227 fitness_args=(model, fitness.call),
228 prior_transform_args=(model,),
229 ) as pool:
--> 230 sampler = self.sampler_cls(
231 prior=pool.prior_transform,
232 likelihood=pool.fitness,
233 n_dim=model.prior_count,
234 filepath=self.checkpoint_file,
235 pool=pool,
236 **self.config_dict_search
237 )
239 if os.path.exists(self.checkpoint_file):
241 self.output_sampler_results(sampler=sampler)
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/autofit/non_linear/search/nest/nautilus/search.py:146, in Nautilus.sampler_cls(self)
143 @Property
144 def sampler_cls(self):
145 try:
--> 146 from nautilus import Sampler
147 return Sampler
148 except ModuleNotFoundError:
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/nautilus/init.py:3
1 """Neural Network-Boosted Importance Sampling for Bayesian Statistics"""
----> 3 from .sampler import Sampler
4 from .prior import Prior
6 author = 'Johannes U. Lange'
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/nautilus/sampler.py:17
14 from threadpoolctl import threadpool_limits
15 from tqdm import tqdm
---> 17 from .bounds import UnitCube, NautilusBound
20 def initialize_worker(likelihood):
21 """Initialize a worker for likelihood evaluations.
22
23 Parameters
(...)
26 Likelihood function that each worker will evaluate.
27 """
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/nautilus/bounds/init.py:4
1 """Modules implementing various multi-dimensional bounds."""
3 from .basic import UnitCube, Ellipsoid, UnitCubeEllipsoidMixture
----> 4 from .neural import NeuralBound, NautilusBound
5 from .union import Union
7 all = ['UnitCube', 'Ellipsoid', 'UnitCubeEllipsoidMixture', 'Union',
8 'NeuralBound', 'NautilusBound']
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/nautilus/bounds/neural.py:10
8 from .basic import Ellipsoid, UnitCubeEllipsoidMixture
9 from .union import Union
---> 10 from ..neural import NeuralNetworkEmulator
13 class NeuralBound():
14 """Neural network-based bound.
15
16 Attributes
(...)
27 bound.
28 """
File ~/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages/nautilus/neural.py:10
6 from sklearn.neural_network import MLPRegressor
7 from threadpoolctl import threadpool_limits
---> 10 @threadpool_limits.wrap(limits=1)
11 def train_network(x, y, neural_network_kwargs, random_state):
12 """Train a network.
13
14 Parameters
(...)
29
30 """
31 return MLPRegressor(
32 random_state=random_state, **neural_network_kwargs).fit(x, y)
AttributeError: type object 'threadpool_limits' has no attribute 'wrap'
from pyautolens.
pip show threadpoolctl
Can you tell me what it says? And then try updating to 3.1.0:
pip install threadpoolctl==3.1.0
from pyautolens.
pip show threadpoolctl
Can you tell me what it says? And then try updating to 3.1.0:
pip install threadpoolctl==3.1.0
Ok~It works now!
$ pip show threadpoolctl
Name: threadpoolctl
Version: 2.2.0
Summary: threadpoolctl
Home-page: https://github.com/joblib/threadpoolctl
Author: Thomas Moreau
Author-email: [email protected]
License: BSD-3-Clause
Location: /home/liuxh/anaconda3/envs/autolens_2023918/lib/python3.10/site-packages
Requires:
Required-by: nautilus-sampler, scikit-learn
from pyautolens.
Related Issues (20)
- Delaunay Implementation HOT 9
- W Tilde Imaging With Interpolation
- Create Tracer from result with same API as instance
- Galaxy.dict() not returning parameters correctly HOT 3
- How to handle memory error while modeling a dataset? HOT 2
- Unit test failing due to from_dict HOT 1
- Multiprocessing RuntimeError HOT 13
- API consistency issues? HOT 1
- Multicore task in a cluster HOT 10
- Autoconf conf.py - Key error HOT 5
- Fix Aggregator Tests
- Database session support for all new types of output
- pylops/scipy.sparse.linalg import does not exist
- Slam script incorrect ResultInterferometer and ResultImaging adapt_image calls HOT 58
- JAX on older HPC issues HOT 2
- Pixelization interferometer search reconstructs negative fluxes HOT 4
- Slam pipeline positions not able to update from previous search HOT 6
- Slam pipeline chaining using mass_total tracer; PowerLaw not working with chaining_util HOT 2
- .json output now working for `PointDataset` HOT 2
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from pyautolens.