| Name | chrLength | masked size | coverage |
|---|---|---|---|
| Current version of soft_masked by ENSEMBL (version 57) | 119146348 | 38123558 | 0.3200 |
| Old version of soft_masked by ENSEMBL (version 52) | 119146348 | 28109149 | 0.2359 |
| RepeatMasked with CONS-Dfam_withRBRM | 119146348 | 21267278 | 0.1785 |
| RepeatMasked with CONS-Dfam (version 3.7) | 119146348 | 2393023 | 0.0201 |
| Not masked | 119146348 | 186207 | 0.0016 |
RepeatMasked with CONS-Dfam_withRBRM:
#==================================================
# number of length percentage
# elements* occupied of sequence
#--------------------------------------------------
#Retroelements 8876 9977785 bp 8.34 %
# SINEs: 583 87954 bp 0.07 %
# Penelope: 0 0 bp 0.00 %
# LINEs: 2346 1433309 bp 1.20 %
# CRE/SLACS 0 0 bp 0.00 %
# L2/CR1/Rex 0 0 bp 0.00 %
# R1/LOA/Jockey 0 0 bp 0.00 %
# R2/R4/NeSL 0 0 bp 0.00 %
# RTE/Bov-B 0 0 bp 0.00 %
# L1/CIN4 2276 1412082 bp 1.18 %
# LTR elements: 5947 8456522 bp 7.07 %
# BEL/Pao 0 0 bp 0.00 %
# Ty1/Copia 1982 1902097 bp 1.59 %
# Gypsy/DIRS1 3277 6474086 bp 5.41 %
# Retroviral 0 0 bp 0.00 %
#
#DNA transposons 10551 5983962 bp 5.00 %
# hobo-Activator 1540 567872 bp 0.47 %
# Tc1-IS630-Pogo 915 237966 bp 0.20 %
# En-Spm 0 0 bp 0.00 %
# MULE-MuDR 4419 3313150 bp 2.77 %
# PiggyBac 0 0 bp 0.00 %
# Tourist/Harbinger 1002 336925 bp 0.28 %
# Other (Mirage, 0 0 bp 0.00 %
# P-element, Transib)
#
#Rolling-circles 3787 2282692 bp 1.91 %
#
#Unclassified: 269 77280 bp 0.06 %
#
#Total interspersed repeats: 16039027 bp 13.40 %
#
#
#Small RNA: 1167 143539 bp 0.12 %
#
#Satellites: 3260 978658 bp 0.82 %
#Simple repeats: 34152 1333320 bp 1.11 %
#Low complexity: 8606 414179 bp 0.35 %
#==================================================RepeatMasked with CONS-Dfam (version 3.7):
#==================================================
# number of length percentage
# elements* occupied of sequence
#--------------------------------------------------
#Retroelements 0 0 bp 0.00 %
# SINEs: 0 0 bp 0.00 %
# Penelope: 0 0 bp 0.00 %
# LINEs: 0 0 bp 0.00 %
# CRE/SLACS 0 0 bp 0.00 %
# L2/CR1/Rex 0 0 bp 0.00 %
# R1/LOA/Jockey 0 0 bp 0.00 %
# R2/R4/NeSL 0 0 bp 0.00 %
# RTE/Bov-B 0 0 bp 0.00 %
# L1/CIN4 0 0 bp 0.00 %
# LTR elements: 0 0 bp 0.00 %
# BEL/Pao 0 0 bp 0.00 %
# Ty1/Copia 0 0 bp 0.00 %
# Gypsy/DIRS1 0 0 bp 0.00 %
# Retroviral 0 0 bp 0.00 %
#
#DNA transposons 0 0 bp 0.00 %
# hobo-Activator 0 0 bp 0.00 %
# Tc1-IS630-Pogo 0 0 bp 0.00 %
# En-Spm 0 0 bp 0.00 %
# MULE-MuDR 0 0 bp 0.00 %
# PiggyBac 0 0 bp 0.00 %
# Tourist/Harbinger 0 0 bp 0.00 %
# Other (Mirage, 0 0 bp 0.00 %
# P-element, Transib)
#
#Rolling-circles 0 0 bp 0.00 %
#
#Unclassified: 0 0 bp 0.00 %
#
#Total interspersed repeats: 0 bp 0.00 %
#
#
#Small RNA: 0 0 bp 0.00 %
#
#Satellites: 0 0 bp 0.00 %
#Simple repeats: 40167 1627440 bp 1.36 %
#Low complexity: 10698 583930 bp 0.49 %
#==================================================| Name | chrLength | defined size | coverage | copy2 count | BISER | BISER merged | ASGART |
|---|---|---|---|---|---|---|---|
| Current version of soft_masked by ENSEMBL (version 57) | 119146348 | 9776236 | 0.0818 | 2625 | 2561 | 1017 | 238 |
| Old version of soft_masked by ENSEMBL (version 52) | 119146348 | 11434422 | 0.0957 | 3155 | 4094 | 1580 | 418 |
| RepeatMasked with CONS-Dfam_withRBRM | 119146348 | 13098118 | 0.1096 | 3480 | 6339 | 2036 | 670 |
| RepeatMasked with CONS-Dfam (version 3.7) | 119146348 | 19236669 | 0.1610 | 5019 | 95566 | 7247 | 9341 |
| Not masked | 119146348 | 19188917 | 0.1606 | 4987 | 100826 | 7417 | 11775 |
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