Related Issues (20)
- Bug in how `vskit` handles an empty list of arguments
- adapter.entity_metadata_map("HP:0000001") with obo adapter causes `DuplicateURIPrefixes` error HOT 7
- Missing support for Python 3.12 HOT 4
- Misleading copyright statement at the bottom of OAK documentation pages HOT 5
- ValueSetExpander is too eager in using sqlite:obo as a default resolver
- Error during information-content execution HOT 5
- pronto_implementation returns a pronto Definition object which interacts oddly with KGCL
- simple obo diffs creates duplicate `Classes added` HOT 5
- Problem using llm adapter HOT 2
- runoak diff erroneously names "relationships" --> "mappings" in markdown summary HOT 3
- Add option to `relationships` for walking up subclass hierarchy
- `validate-mappings`: `NotImplementedError: ... NoneType`
- Missing `defusedxml` dependency HOT 3
- Run subset of tests in environment with no extras installed
- Jaccard similarity differences when using information content HOT 2
- Breaking change in Synonymizer? HOT 3
- Document instructions for running the obographs-compliance suite HOT 4
- Update SemSimianImplementation and CLI to allow using custom IC maps and frequencies
- Pin ruff checks and codespell checks HOT 1
- Integrate notebooks into sphinx documentation (will break URLs) HOT 2
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