Comments (2)
@cmungall rightly points out that this is a fairly old commit. After a git pull
to this commit 8a6dfc3 and poetry install --extras llm
I'm seeing this error:
(oaklib-py3.11) ~/PythonProject/ontology-access-kit main $ poetry run runoak -i llm:sqlite:obo:hp lexmatch
NotImplementedError
from ontology-access-kit.
Closing this ticket - @cmungall tells me that this error actually is correct, and this slug in not yet supported by lexmatch
from ontology-access-kit.
Related Issues (20)
- Pin ruff checks and codespell checks HOT 1
- Integrate notebooks into sphinx documentation (will break URLs) HOT 2
- Define behavior when conflicting idspaces are specified
- Calculating ICs with an annotation corpus as background is slow
- Making retrieval of axiom annotations for synonyms faster
- Allow passing in of ontology terms on command line when using enrichment in ontology-only mode
- Improve python level access to expression language
- Add a way of detecting all usages of an ontology term
- Duplicated ClassCreation changes in CSV diff output HOT 5
- [OAK diff] Markdown output misformatted on `Mappings` section HOT 1
- vskit expander should support PVs in the MIxS label [id] style HOT 3
- add max depth for `vskit expand` HOT 2
- Sphinx documentation for CLI has disappeared from website HOT 1
- lexmatch --add-label option will update but not create new labels for sql backend
- `diff` in KGCL format generates `create None`. HOT 3
- Allow user to explicitly manage pystow cache (for downloaded sqlite dbs) HOT 5
- Missing optional dependencies cause the test suite to fail
- Spurious warnings about invalid CURIEs cause `test_annotate_file` to fail
- gilda tests failing - punkt is punked
- Annotate function emits lots of errors and is slow/verbose HOT 3
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from ontology-access-kit.