Comments (4)
cmungall
commented on September 27, 2024
We should fix this but we can also make semsimian an optional dependency
from ontology-access-kit.
Silvanoc
commented on September 27, 2024
PR on semsimian to replace support for 3.7 with support for 3.12 provided: monarch-initiative/semsimian#121
from ontology-access-kit.
cmungall
commented on September 27, 2024
We should also add 3.12 to the test matrix
from ontology-access-kit.
hrshdhgd
commented on September 27, 2024
Adding it to the next PR
from ontology-access-kit.
Related Issues (20)
- Problem using llm adapter HOT 2
- runoak diff erroneously names "relationships" --> "mappings" in markdown summary HOT 4
- Add option to `relationships` for walking up subclass hierarchy
- `validate-mappings`: `NotImplementedError: ... NoneType`
- Missing `defusedxml` dependency HOT 3
- Run subset of tests in environment with no extras installed
- Jaccard similarity differences when using information content HOT 2
- Breaking change in Synonymizer? HOT 3
- Document instructions for running the obographs-compliance suite HOT 4
- Update SemSimianImplementation and CLI to allow using custom IC maps and frequencies
- Pin ruff checks and codespell checks HOT 1
- Integrate notebooks into sphinx documentation (will break URLs) HOT 2
- Define behavior when conflicting idspaces are specified
- Calculating ICs with an annotation corpus as background is slow
- Making retrieval of axiom annotations for synonyms faster
- Allow passing in of ontology terms on command line when using enrichment in ontology-only mode
- Improve python level access to expression language
- Add a way of detecting all usages of an ontology term
- Duplicated ClassCreation changes in CSV diff output HOT 5
- [OAK diff] Markdown output misformatted on `Mappings` section HOT 1
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