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metadata-schema-publisher

Script for creating a repo of schemas in response to Github commits

metadata-spreadsheet-tools

Tools for generating metadata spreadsheets

metadata-standards

This repo is to describe the metadata standards associated with the Human Cell Atlas

metrics

HCA metrics visualization via Grafana

migration-service

DCP Migration Service, updating existing metadata in the DCP to be compatible to with the latest metadata schema versions.

mint-deployment

monitoring-dashboards

ontology

pipeline-tools

Pipeline-tools for HCA DCP Secondary Analyses Service

portability

proforma

query-service

Prototype implementation of the DCP Query Service, a metadata search engine for HCA

ranglr

An R package with tools to help the data wrangling process

scale-test

schema-template-generator

Interactive UI for generating metadata schema templates

schema-test-data

This repository is for the test [meta]data associated with the latest updates of the HCA metadata schema.

sctools

Utilities for large scale distributed single cell data processing

secondary-analysis

Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform

secondary-analysis-deploy

This repo hosts the deployment configuration and scripts for the Pipeline Execution Service

skylab

Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines

skylab-analysis

Analysis and benchmarking reports for Skylab pipelines

spring-boot-cookbook

ENA Spring Boot Microservices Cookbook

status-api

Return build and application status badges

table-testing

requirements, examples, and tests for expression matrix file formats

ucsc-wrangling

unity

UNITY is a workflow benchmarking platform used for developing and comparing pipelines.

unity-analysis

Source repo for Unity benchmark reference analysis WDLs and dependencies

upload-service

DCP Ingestion File Upload Service

wiki

Index of the HCA wikis and other doc resources

workflows-workshop

Material for Workshops on Making HCA DCP Compatible Workflows