Giter Club home page Giter Club logo

rosettr's Introduction

rosettR

rosettR is a protocol for a high-throughput growth phenotyping assay for Arabidopsis implemented as an R-package that details all steps and provides data analysis with minimal required user interaction.

Main project website.

Installation

This package is not yet on CRAN so installation is best done using the devtools package. First, install EBImage which is a dependency from bioconductor that needs to be installed separately. In R do:

source("http://www.bioconductor.org/biocLite.R")
biocLite("EBImage")

Then, after installing devtools, do

library(devtools)
install_github("hredestig/rosettR", subdir="pkg")

Then get started by opening the introduction vignette and following the examples provided there.

library(rosettR)
vignette("introduction", "rosettR")

rosettr's People

Contributors

fitome avatar hredestig avatar peterbayer avatar

Stargazers

avatar

Watchers

avatar avatar avatar

Forkers

fitome

rosettr's Issues

unknown error in date_original

R version 3.2.3
Windows 7

When attempting to follow the vignette:

makeReport(pathToExperiment, "overview", quiet=TRUE)

produces the following error in the console window:

Error in shell.exec(url) : problem in displaying 'overview.html' In addition: Warning message: In readLines(con) : incomplete final line found on 'overview.Rmd'

The overview output folder is created, and if I navigate and open overview.html I get the following error message displayed in the browser window - with no graphs or plate images displayed on the page.

## Error in date_original(file): unknown error in date_original

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.