Comments (1)
s6juncheng
commented on July 27, 2024
Hi @vidhyajagannathan, thanks for interested in MMSplice. MMSplice was developed with human data, although there should be some correlations between human splicing regulatory code and other species, it might not generalize well. If you have standard gtf annotation file from ensembl, you might be able to still run MMSplice, but I would be cautious when interpreting the results.
from mmsplice_mtsplice.
Related Issues (20)
- writeVCF not implemented. I wrote some implementation HOT 6
- Breaks with latest versions of kipoiseq HOT 1
- Error installing MMSplice HOT 3
- Adding vcf/gtf chromosome name check HOT 3
- error running example data - Input sequence acceptor intron length cannot be longer than the input sequence HOT 3
- Problem combining MMSplice module with custom annotation in VEP HOT 4
- Controlling the number of threads HOT 2
- MemoryError HOT 17
- Replace sklearn models with numpy implementation
- Error with running MMSplice - keras decode('utf-8') HOT 4
- Used in non-model species? HOT 1
- Interpretation of Results HOT 2
- Identifying the predicted types of splicing events HOT 2
- Conda package for MMsplice HOT 1
- "stop iteration" trouble HOT 2
- Package dependencies don't overlap & trouble with google collab script HOT 3
- model predictions in google collab HOT 1
- running predictions with tensorflow is slow
- ValueError: numpy.ndarray size changed, may indicate binary incompatibility.
- How to interpret tissue specific results HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mmsplice_mtsplice.