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1d_gaussianfit

Matlab script to fit univariate Gaussian Mixture Model (GMM) to a distribution of an observable

3d_densitymap

Python script to compute 3D density map for an ensemble of conformational models

abberior-tools

python scripts for Abberior microscope

avtraj

chisurf

Global analysis platform for fluorescence data

clsmview

CLSM viewer for ChiSurf

conda-recipes

Recipes for Anaconda

contact_map

Python script for mapping the presence of inter-residue contacts in a biomolecule

distogram

Python script for calculating ensemble weighted inter-residue distance histogram (distogram)

distogram_mustd

Python script to compute and visualize residue pairwise mean distance and standard deviation of a distogram

exchange-formats

fit2x

Maximum likelihood fits for low photon count data - For active develeopment visit gitlab.peulen.xyz

flr2mmcif

Convert a spreadsheet with fluorescence information to a mmcif file for deposition in PDB-Dev

fluorescence-tools.github.io

fouriershellcorr

Python script to compute Fourier Shell Correlation curve between two half-3D density maps

fps

Fluorescence positioning system

fretlines

fretrest

Helper scripts for FRET-restrained MD simulations. Generate AMBER restraint files (DISANG).

hbond

Python script for identifying presence of hydrogen bonds based on geometrical criteria

imp.bff

IMP's Bayesian Fluorescence Framework

k2dist

Compute and visualize orientation factor (kappa2) distributions

labellib

Library for coarse-grained simulations of probes flexibly coupled to biomolecules.

mapack

Linear algebra library for .NET

maxent-prda

Re-weighting of conformational ensembles towards the inter-dye distance distributions derived from experiment

mdtraj_fps

mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories

multipletaupycorr

ndxplorer

Histograms of multidimensional data

olga

FRET-screening of conformations and experiment planning

pam

This is a mirror of the PAM repository hosted on GitLab. Please refer to the GitLab repository for active development.

quest

QuEst - Quenching Estimator for fluorophores coupled to proteins - active development on gitlab.peulen.xyz