A docker image containing the following algorithms fully configured:
First you need to install Docker on your computer. You can find all the details here.
Then, to get our docker image, you need to type:
docker pull fjossinet/assemble2
In general, these algorithms need input files. Consequently, you have to mount the file system of your computer (the host) in the Docker container (the guest). This is done with the -v option.
LocARNA algorithm:
docker run -v /Users/fjossinet/my_files/:/data fjossinet/assemble2 mlocarna /data/my_sequences.fasta
RNAVIEW algorithm:
docker run -v /Users/fjossinet/my_files/:/data fjossinet/assemble2 rnaview -p /data/my_3D.pdb
RNAFold algorithm:
docker run -v /Users/fjossinet/my_files/:/data fjossinet/assemble2 bash -c 'RNAfold < /data/my_sequence.fasta'"