Running the following small Ultra96 design through Vivado 2019.2 (xczu3eg-sbva484-1-i device):
# In frame 0x00081e00 12 bits were not converted.
{ unknown_bit = "00081e00_132_3", unknown_segment = "0x00081e00", unknown_segbit = "00_2115" }
{ unknown_bit = "00081e00_134_5", unknown_segment = "0x00081e00", unknown_segbit = "00_2149" }
{ unknown_bit = "00081e00_134_6", unknown_segment = "0x00081e00", unknown_segbit = "00_2150" }
{ unknown_bit = "00081e00_138_3", unknown_segment = "0x00081e00", unknown_segbit = "00_2211" }
{ unknown_bit = "00081e00_134_8", unknown_segment = "0x00081e00", unknown_segbit = "00_2152" }
{ unknown_bit = "00081e00_140_5", unknown_segment = "0x00081e00", unknown_segbit = "00_2245" }
{ unknown_bit = "00081e00_140_6", unknown_segment = "0x00081e00", unknown_segbit = "00_2246" }
{ unknown_bit = "00081e00_140_8", unknown_segment = "0x00081e00", unknown_segbit = "00_2248" }
{ unknown_bit = "00081e00_134_13", unknown_segment = "0x00081e00", unknown_segbit = "00_2157" }
{ unknown_bit = "00081e00_140_13", unknown_segment = "0x00081e00", unknown_segbit = "00_2253" }
{ unknown_bit = "00081e00_139_13", unknown_segment = "0x00081e00", unknown_segbit = "00_2237" }
{ unknown_bit = "00081e00_133_13", unknown_segment = "0x00081e00", unknown_segbit = "00_2141" }
# In frame 0x00081e01 14 bits were not converted.
{ unknown_bit = "00081e01_138_1", unknown_segment = "0x00081e00", unknown_segbit = "01_2209" }
{ unknown_bit = "00081e01_138_2", unknown_segment = "0x00081e00", unknown_segbit = "01_2210" }
{ unknown_bit = "00081e01_138_3", unknown_segment = "0x00081e00", unknown_segbit = "01_2211" }
{ unknown_bit = "00081e01_132_1", unknown_segment = "0x00081e00", unknown_segbit = "01_2113" }
{ unknown_bit = "00081e01_132_2", unknown_segment = "0x00081e00", unknown_segbit = "01_2114" }
{ unknown_bit = "00081e01_132_3", unknown_segment = "0x00081e00", unknown_segbit = "01_2115" }
{ unknown_bit = "00081e01_140_1", unknown_segment = "0x00081e00", unknown_segbit = "01_2241" }
{ unknown_bit = "00081e01_140_5", unknown_segment = "0x00081e00", unknown_segbit = "01_2245" }
{ unknown_bit = "00081e01_140_7", unknown_segment = "0x00081e00", unknown_segbit = "01_2247" }
{ unknown_bit = "00081e01_140_13", unknown_segment = "0x00081e00", unknown_segbit = "01_2253" }
{ unknown_bit = "00081e01_134_1", unknown_segment = "0x00081e00", unknown_segbit = "01_2145" }
{ unknown_bit = "00081e01_134_5", unknown_segment = "0x00081e00", unknown_segbit = "01_2149" }
{ unknown_bit = "00081e01_134_7", unknown_segment = "0x00081e00", unknown_segbit = "01_2151" }
{ unknown_bit = "00081e01_134_13", unknown_segment = "0x00081e00", unknown_segbit = "01_2157" }
It looks like these are the location of the two IO pins in the HDIO_TOP_RIGHT tile, and they are "unknown" because for some reason it isn't matching any of the IO types in the database - I haven't looked into why yet.