Comments (2)
Hi Marc, if you installed the API separately (i.e. not using INSTALL.pl to set it up) then you will see this kind of message. In that case it is up to you to ensure that your checkouts of those APIs are up-to-date, which it seems they are. The script could be a bit more intelligent about this and perhaps let you know you are responsible for checking for any post-release updates.
If you allow INSTALL.pl to set up the APIs for you, then a version is recorded for each downloaded module with the idea that this check can then inform users if there are any post-release updates that they might like or need to download.
from ensembl-vep.
I see! In that case this can be closed.
from ensembl-vep.
Related Issues (20)
- Use extracted data against of compressed [QUESTION] HOT 1
- Docker v111.0 and. v112.0 got error bgzip not found in path HOT 3
- VEP error for structural variation VCF input HOT 8
- Missing genes on chrMT when using --refseq HOT 3
- Different cDNA length for several RefSeq transcript HOT 2
- gnomAD r4.1.0 for G2P HOT 1
- VEP v112 `ALLELE_NUM` empty in output VCF for input SV HOT 11
- --individual_zyg ind or all option triggers error. HOT 16
- CDS coordinate misalignment for some genes in VEP version 112 HOT 5
- Synonyms file does not work in the offline mode HOT 7
- Cant Install plugins HOT 4
- VEP112 predicts "inframe_insertion, stop_retained_variant" in cases where previously was predicted as "frameshift_variant, stop_gained" HOT 6
- Q: How to filter variants by a specific feature before --pick_order is applied? HOT 5
- `0` does not work as a variant identifier HOT 3
- StructuralVariantOverlap Hanging Indefinitely HOT 2
- "No cache found for homo_sapiens, version 105", but the latest version is 112 HOT 6
- issue specifiying cache dir (-d) and downloading files HOT 2
- Seeking clarity on --fields vs --custom usage HOT 4
- Request for Documentation and Containerization of Bio::EnsEMBL::XS Module for VEP to run faster. HOT 3
- filter_vep on HGNC_ID HOT 5
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from ensembl-vep.