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augustus

Genome annotation with AUGUSTUS

augustus-container

Containerize Augustus ComPred

bio-toolbox

A loose collection of mixins and libs, packaged as a gem

blasr

BLASR: The PacBio® long read aligner

bloodtypingarray

The software for the Intitutes genotyping array based blood group typing

clinical-metagenomics

configs

Config files used to define parameters specific to compute environments at different Institutions.

eutaxpro

Taxonomic profiling of eukaroyte genomes using amplicon sequencing

exome-seq

exoseq

Exome Sequencing analysis pipeline (Work in progress)

expression-database

gabi

Genomic Analysis of Bacterial Isolates

genome-database

MYSQL-based genome database template

genome-db

A simple genome database API

genomeannotator

genomedb

A simple psql genome db api...

genotype-gui

Rails project to provide a simple GUI for entering and curating genotype-disease type information

gmo-check

Pipeline to check GMOs from short read data

hla

xHLA: Fast and accurate HLA typing from short read sequence data

ikmb-demux

Container recipe for the demux infrastructure at the CCGA sequencing centre

ikmb-pipelines

Production pipelines for the IKMB NGS core facility

ikmb_amplicon_processing

kinseq

A workflow to determine relatedness from WGS data in non-model organisms

lameta

LaMeta - getting more from your metagenomic data (like you used to...)

locus-database

api to a simple locus db

mecat2

metagenomic-profiling

metaorganism-research

Production pipelines for the CRC1182

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

mirbase

API to local mirBase install