Fastphylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators", "Fast Neighbor Joining", and more. See the paper "FastPhylo: Fast tools for phylogenetics" for more information.

The software is licensed under the MIT license.

You can download binaries for Mac and Linux:

• Linux (v3.16): https://dl.dropboxusercontent.com/u/29398756/Fastphylo/fastphylo-1.0.2-linux.tar.gz
• macOS X (11.10, El Capitan): https://dl.dropboxusercontent.com/u/29398756/Fastphylo/fastphylo-1.0.2-Darwin.tar.gz

Source code is available through cloning of this repository -- see GitHub links and resources. See the file "INSTALL" for compilation and installation instructions!

For the moment, we refer to the docs at our old web site: fastphylo.sourceforge.net

• Elias & Lagergren, Fast Computation of Distance Estimators, BMC Bioinformatics, 2007.
• Elias & Lagergren, Fast Neighbor Joining, Theoretical Computer Science, 2009.
• Khan et al, FastPhylo: Fast tools for phylogenetics, BMC Bioinformatics, 2013.

The directory layout of this package:

• src/c++ the c++ sources
• src/docbook the docbook sources for the html documentation on the homepage