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24-03_bioinfo_ws

presentation and resources for NorPreM bioinformatics workshop in March 2024

ann_metagenomics

This repository contains the implementation of an artificial neural net in PyBrain for classifying metagenomic taxonomic classifications

clockin

Time keeping system for office hours

covid19-visualization

Visualization web-app for the Corona Portal

ecc

python flavour of EHOS

evandam.conda

Manage conda environments and packages with Ansible

fastphylo

FastPhylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators", "Fast Neighbor Joining", and more.

infrastructure-playbook

Ansible playbooks for managing usegalaxy.no.

itsone_marine

Scripts and information to generate the marine fungi nr ITSone fasta subset

kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

latex_with_actions_template

meta-pipe

Supplementary information to the Meta-pipe article

metavis

META-pipe visualization prototype

mmp_interactive

Marine metagenomics portal - Interactive explorer of numeric metadata

peruse

Visualization module for META-pipe

sfb-course

Scripts and other relevant code for SfB courses

silvamar

Scripts creating the SILVA SSU subset SILVAmar, pertaining to marine origanisms only

sortmerna

SortMeRNA: a sequence analysis tool for filtering, mapping and clustering NGS reads.

sqlite-web

Web-based SQLite database browser written in Python