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Name: EBI Variation

Type: Organization

Bio: The Variation team from EMBL-EBI develops several bioinformatics projects such as EVA, DGVa and EGA

Location: EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, https://goo.gl/maps/xX1tn

EBI Variation's Projects

Tools compatible with the infrastructure of the European Variation Archive pipeline

Training materials for the European Variation Archive

This repository has now been split for better modularization. Please see eva-pipeline (develop branch), eva-tools and eva-ws.

Utilities for the research of a suitable variant warehouse for EVA

Tool for merging large sets of VCF files

Web front-end for the European Variation Archive

European Variation Archive REST web services API

Examples to be used as reference in other projects

A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics

Generic REST API for submission metadata objects (usable by AMP T2D, EGA and EVA)

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

Pipeline to provide evidence strings for Open Targets from PharmGKB

A web application for manual curation of trait-to-ontology mappings, including provenance and integration with EBI SPOT stack.

The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.

Library of core components used by multiple EBI Variation projects

Validation suite for Variant Call Format (VCF) files, implemented using C++11

A pipeline which uses Ensembl VEP REST API to map input variants to their most severe functional consequence and gene information

Prototypes for new website components in React