deib-geco Goto Github PK

gmql2.0_jan

gmql_package

GMQL Packages and installation

metadata-enricher

metadata-manager

Public dataset downloader for GMQL framework

mutviz

MutViz - Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types

nmtf-drugrepositioning

nmtf-link

NMTF-link is designed for computing link predictions using a generalized Non-negative Matrix Tri-Factorization (NMTF) based method.

opengdc

An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format

pygmql

Python Library for data analysis based on GMQL

rgmql

RGMQL: Scalable and interoperable computing of heterogeneous omics big data and metadata in R/Bioconductor

rgmqllib

jar Scala API for RGMQL package

rulebasegenerator

shallowchrome

simsearch-app

An IGB plugin to identify and compare occurrences of (epi)genomics feature patterns in multiple genome browser tracks.

simsearch-quickload

Quickload repository with sample data for testing the SimSearch app.

tfhaz

R package to identify Transcription Factor High Accumulation DNA Zones

tica_v2

Enhancement project for TICA, and web application for external users

varianthunter

VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.

varsum

Data summarization tool for 1000 Genomes Project data

viruclust

viruslab

viruslab-eit

virusurf_downloader

virusurf downloader

virusviz

vue-metadata

wals

Repository for the website of the International Workshop of Web Applications for Life Sciences, co-located with ICWE 2022