Comments (2)
davek44
commented on September 25, 2024
After reviewing the README, I don't think I fully finished my thought when I was writing it. That export statement works well for me. Are you saying that it's not working, specifically inside jupyter notebooks?
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dborgesr
commented on September 25, 2024
So the export works if you spin up the Docker container and then manually export the variables, but the image won't work if you try to export the paths in the Dockerfile itself ie:
ENV LUA_PATH='$BASSETDIR/src/?.lua;$LUA_PATH'
The image still doesn't find lua. I think it might have something to do with length? or with the ? ? not sure...
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Related Issues (20)
- Training aways converges after 2 or 3 epochs HOT 4
- Training takes too long HOT 3
- Pre-trained Weights? HOT 1
- Torch-HDF5 Failure during Writing Output by basset_motifs_predict.lua HOT 3
- First Epoch Loss is Bigger than Expected HOT 2
- Nucleotide Order in Motif Heatmap Reversed HOT 1
- how are filters combined HOT 2
- Error in running basset_sat_vcf.py HOT 1
- Convolutional layers - padding and bias HOT 1
- input and target size mismatch when running test.lua HOT 3
- Citation on README HOT 1
- Prediction tasks specification HOT 1
- install_data.py requires more than 30 GiB of memory HOT 2
- Docker image Lua and Python setups wrong
- how to install 'convnet' module HOT 1
- ENUM error when running basset_train.lua HOT 7
- preprocess_features.py file is generating empty output bed files HOT 2
- bedtools getfasta skipping problem HOT 1
- Used in non human species HOT 1
- Original dataset Basset is trained on HOT 1
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