Comments (1)
davek44
commented on September 25, 2024
convnet isn't a luarocks module; it's part of this package: https://github.com/davek44/Basset/blob/master/src/convnet.lua
I'm guessing your PATH variables aren't set properly. I'm copying the instructions in the README here:
Basset relies on the environmental variable BASSETDIR to orient itself. In your startup script (e.g. .bashrc), write
export BASSETDIR=the/dir/where/basset/is/installed
To make the code available for use in any directory, also write
export PATH=$BASSETDIR/src:$PATH
export PYTHONPATH=$BASSETDIR/src:$PYTHONPATH
export LUA_PATH="$BASSETDIR/src/?.lua;$LUA_PATH"
from basset.
Related Issues (20)
- Training aways converges after 2 or 3 epochs HOT 4
- Training takes too long HOT 3
- Pre-trained Weights? HOT 1
- Torch-HDF5 Failure during Writing Output by basset_motifs_predict.lua HOT 3
- First Epoch Loss is Bigger than Expected HOT 2
- Nucleotide Order in Motif Heatmap Reversed HOT 1
- how are filters combined HOT 2
- Error in running basset_sat_vcf.py HOT 1
- Convolutional layers - padding and bias HOT 1
- input and target size mismatch when running test.lua HOT 3
- Citation on README HOT 1
- Prediction tasks specification HOT 1
- install_data.py requires more than 30 GiB of memory HOT 2
- Docker image Lua and Python setups wrong
- ENUM error when running basset_train.lua HOT 7
- preprocess_features.py file is generating empty output bed files HOT 2
- bedtools getfasta skipping problem HOT 1
- Used in non human species HOT 1
- Original dataset Basset is trained on HOT 1
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from basset.