Comments (3)
It looks like the sequence lengths are mismatched. What steps did you use to generate the encode_roadmap.h5 file? I just ran the steps here https://github.com/davek44/Basset/blob/master/install_data.py, and it worked for me.
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Well the networks in China are isolated partly so the server can't reach dropbox, run install_data.py and download the data. So I have to download the data manually and may be the error occured. Are there some ways to get the data avoiding the dropbox?
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Related Issues (20)
- Training aways converges after 2 or 3 epochs HOT 4
- Training takes too long HOT 3
- Pre-trained Weights? HOT 1
- Torch-HDF5 Failure during Writing Output by basset_motifs_predict.lua HOT 3
- First Epoch Loss is Bigger than Expected HOT 2
- Nucleotide Order in Motif Heatmap Reversed HOT 1
- how are filters combined HOT 2
- Error in running basset_sat_vcf.py HOT 1
- Convolutional layers - padding and bias HOT 1
- Citation on README HOT 1
- Prediction tasks specification HOT 1
- install_data.py requires more than 30 GiB of memory HOT 2
- Docker image Lua and Python setups wrong
- how to install 'convnet' module HOT 1
- ENUM error when running basset_train.lua HOT 7
- preprocess_features.py file is generating empty output bed files HOT 2
- bedtools getfasta skipping problem HOT 1
- Used in non human species HOT 1
- Original dataset Basset is trained on HOT 1
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