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mbsa's Introduction

Hi there, I'm Chenzhe Luo 👋👋

I'm a Lab Manager!

  • 🔭 I’m currently working on developing machine learning and applied mathematical techniques for high-dimensional and high-throughput biomedical data,e.g. scRNAseq, GWAS
  • 🌱 I’m currently learning everything 🤣
  • 👯 I’m looking to collaborate with other content creators
  • 🥅 2024 Goals: Contribute more to Open Source projects

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  1. ❗️ Closed issue #1 in czheluo/Perl-Script

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mbsa's Issues

Running your Demo

Hi,

I would love to give your pipeline a try, however I have to admit I am having trouble figuring out the inputs for the demo. I tried the following command

perl ../bsa.pipeline.pl \
  -vcf pop.BSA.vcf \
  -pid R01,R02, \
  -bid R03,R04 \
  -bs 38 \
  -out Test_out

I'm guessing on the parent and bulk names from the vcf file, but I don't what to put in the annotation field. Is it also required? also I have a VCF file with one parent and the two bulks. Is it possible to use this data with your pipeline?

Thanks in advance for your help

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