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ggcyto

Visualize Cytometry data with ggplot2

ggjoy

Geoms to make joy plots using ggplot2

ggplot2

An implementation of the Grammar of Graphics in R

ggplot2-book

ggtimeseries

Time series visualisation

giniclust

GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index

ginkgo

Cloud-based single-cell copy-number variation analysis tool

giotto

Single-cell spatial analysis pipeline

gray2017elife

gtexv6prarevariation

Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript

h2o-3

Fast Scalable Machine Learning API For Smarter Applications (Deep Learning, GBM, GLM, etc.)

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hic_ab_compartments_mouse

hsmmsinglecell

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

inchlib.js

InCHlib (Interactive Cluster Heatmap library)

infercnv

Inferring CNV from Single-Cell RNA-Seq

intervaltree

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

introduction_to_ml_with_python

Notebooks and code for the book "Introduction to Machine Learning with Python"

it-italy

Football data for Italy incl. Serie A, Serie B, etc.

juicebox

Software for visualizing data from Hi-C and other proximity mapping experiments

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

keras

Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

lachesis

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

libd_n36

derfinder analysis of LIBD post-mortem brain data (36 samples)

lm

A github repo for the advanced linear models for data science book

loftee

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

machine-learning-class

This project contains my code for the programming exercises in the Stanford University Machine Learning class on Coursera.

magic