I tried to install seissol through ck but it didn'k work. It crashed down with hdf5. Here are the reporst.

Thanks for any suggestion!

Makefile:553: recipe for target 'h5tools_str.lo' failed
make[2]: *** [h5tools_str.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
Makefile:553: recipe for target 'h5tools_dump.lo' failed
make[2]: *** [h5tools_dump.lo] Error 1
../../../hdf5-1.8.11/tools/lib/h5tools.c:1549:8: warning: 'type_id' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(H5Tclose(type_id) < 0)
^
../../../hdf5-1.8.11/tools/lib/h5tools.c: In function 'render_bin_output_region_blocks':
../../../hdf5-1.8.11/tools/lib/h5tools.c:1437:8: warning: 'type_id' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(H5Tclose(type_id) < 0)
^
../../../hdf5-1.8.11/tools/lib/h5tools.c:1440:8: warning: 'dtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(H5Tclose(dtype) < 0)
^
make[2]: Leaving directory '/import/deadlock-data/dli/CK-TOOLS/lib-hdf5-static-1.8.11-gcc-4.9.2-lib.mpi-2.1.5-linux-64/obj/tools/lib'
Makefile:497: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/import/deadlock-data/dli/CK-TOOLS/lib-hdf5-static-1.8.11-gcc-4.9.2-lib.mpi-2.1.5-linux-64/obj/tools'
Makefile:539: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
Error: build failed!

CK detected a PROBLEM in the third-party CK package:

CK package:           lib-hdf5-1.8.11-parallel-static-src
Native package URL:   https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.11/src
CK repo:              ck-env
CK repo URL:          https://github.com/ctuning/ck-env
CK package URL:       https://github.com/ctuning/ck-env/tree/master/package/lib-hdf5-1.8.11-parallel-static-src
Issues URL:           https://github.com/ctuning/ck-env/issues

Please, submit the log to the authors of this external CK package at "https://github.com/ctuning/ck-env/issues" to collaboratively fix this problem!

On the shared packages site and in ck CLI calls, netcdf is listed as lib-netcdf-4-4.1. I believe it should actually be lib-netcdf-4.4.1 (note the two periods rather than two dashes). I presume renaming this directory and editing this info file would fix it.

By default, CK SeisSol package uses GCC compiler. We would like to test it with Intel compilers at some point. Help is appreciated!

@SteVwonder . Let's use this ticket to add Flux as a job manager to CK.

It should be added similar to Slurm:

• https://github.com/ctuning/ck-scc18/blob/master/program/seissol-netcdf/ck_process.py
• https://github.com/ctuning/ck-scc18/blob/master/program/seissol-netcdf/ck_print_job_status.py
• https://github.com/ctuning/ck-scc18/blob/master/program/seissol-netcdf/ck_print_job_log.py

I would like to test if I can install a few dependencies via EasyBuild similar to Spack, and then detect them and use them to build customized SeisSol:

• [email protected]
• [email protected] %gcc
• [email protected] %gcc +mpi +dap -pic -shared ^[email protected] ^[email protected] +mpi +fortran -shared -pic