1. Janovar does not take into account that two neighboring variants can be lying on the same haploty and f. e. in the same codon.
   (Obviously, a haplotype caller needs to be used beforhand).

better menu-structure.

any volunteers? any suggestions? @pnrobinson @visze anybody?

@pnrobinson I can fix, but would be good if let us know when github sends you an error-report.

Conversion error: Jekyll::Converters::Markdown encountered an error while converting 'teaching-med-genomics.md':
                    invalid byte sequence in UTF-8
jekyll 3.0.1 | Error:  invalid byte sequence in UTF-8

Is it possible to make no redirection from compbio.charite.de to charite.github.io?

(like compbio.charite.de/redmine)

If not please use https://charite.github.io instead of http://charite.github.io

In http://charite.github.io/software-boqa.html

Links:
http://compbio.charite.de/contao/tl_files/boqa/roc-results.html
http://compbio.charite.de/contao/tl_files/boqa/pr-results.html
compbio.charite.de/boqa-demo/main

With our transfer to kramdown several pages are not displayed correctly, because e.g.

Transcription Profiling

does not work anymore.

top-left search field is not doing anything

@enormandeau reported:

The web start button on this page (http://charite.github.io/software-ontologizer.html) returns a NOT FOUND error. Where would the proper application be found?

probably caused the changes made by @visze

please debug, see Troubleshooting search