charite Goto Github PK
Name: Computational Biology Berlin
Type: Organization
Location: Berlin, Germany
Computational Biology Berlin's Projects
asdpex
charite.github.io
Charité Computational Biology Website
chipseqknime
KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/
denovocaller
Denovo Variation Caller for simple familie trios (mother, father, affected child)
hypersmurf
Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
hypersmurf-tutorial
Tutorial how you can the hyperSMURF algorithm in your Java application
jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
jannovar_example_app
Minimal Maven application using Jannovar
jannovar_tutorial
Jannovar Tutorial Applications
ngspipeline
Our NGS Pipeline using Nextflow
q
Q ChIP-seq peak caller
topodombar
Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries
weka-gwava
Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832
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