Comments (4)
marcjwilliams1
commented on July 3, 2024
sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] MCMCpack_1.4-4 MASS_7.3-51.4 coda_0.19-3 mobster_0.1.0
[5] RColorBrewer_1.1-2 peakPick_0.11 sads_0.4.2 bbmle_1.0.23.1
[9] ggpubr_0.2.5 magrittr_1.5 easypar_0.2.0 crayon_1.3.4
[13] pio_0.1.0 forcats_0.5.0 stringr_1.4.0 dplyr_0.8.5
[17] purrr_0.3.3 readr_1.3.1 tidyr_1.0.2 tibble_3.0.0
[21] ggplot2_3.3.0 tidyverse_1.3.0
loaded via a namespace (and not attached):
[1] VGAM_1.1-2 colorspace_1.4-1 ggsignif_0.6.0
[4] seqinr_3.6-1 ellipsis_0.3.0 XVector_0.24.0
[7] GenomicRanges_1.36.1 fs_1.4.1 rstudioapi_0.11
[10] farver_2.0.3 MatrixModels_0.4-1 ggrepel_0.8.2
[13] fansi_0.4.1 mvtnorm_1.1-0 lubridate_1.7.8
[16] xml2_1.3.1 codetools_0.2-16 splines_3.6.1
[19] doParallel_1.0.15 knitr_1.28 ade4_1.7-13
[22] jsonlite_1.6.1 Rsamtools_2.0.3 mcmc_0.9-6
[25] packrat_0.5.0 broom_0.5.5 gganimate_1.0.5
[28] dbplyr_1.4.2 compiler_3.6.1 httr_1.4.1
[31] backports_1.1.6 assertthat_0.2.1 Matrix_1.2-17
[34] lazyeval_0.2.2 cli_2.0.2 tweenr_1.0.1
[37] htmltools_0.4.0 quantreg_5.51 prettyunits_1.1.1
[40] tools_3.6.1 gtable_0.3.0 glue_1.4.0
[43] GenomeInfoDbData_1.2.1 Rcpp_1.0.4.6 cellranger_1.1.0
[46] vctrs_0.2.4 Biostrings_2.52.0 GUILDS_1.3
[49] nlme_3.1-140 iterators_1.0.12 xfun_0.12
[52] rvest_0.3.5 lifecycle_0.2.0 poilog_0.4
[55] zlibbioc_1.30.0 scales_1.1.0 dndscv_0.0.1.0
[58] clisymbols_1.2.0 hms_0.5.3 parallel_3.6.1
[61] SparseM_1.77 bdsmatrix_1.3-4 stringi_1.4.6
[64] S4Vectors_0.22.1 foreach_1.5.0 BiocGenerics_0.30.0
[67] BiocParallel_1.18.1 GenomeInfoDb_1.20.0 rlang_0.4.5
[70] pkgconfig_2.0.3 bitops_1.0-6 lattice_0.20-38
[73] htmlwidgets_1.5.1 tidyselect_1.0.0 R6_2.4.1
[76] IRanges_2.18.3 magick_2.2 generics_0.0.2
[79] CNAqc_0.1.0 DBI_1.1.0 pillar_1.4.3
[82] haven_2.2.0 withr_2.1.2 RCurl_1.95-4.12
[85] modelr_0.1.6 plotly_4.9.2.1 progress_1.2.2
[88] grid_3.6.1 readxl_1.3.1 data.table_1.12.8
[91] reprex_0.3.0 digest_0.6.25 numDeriv_2016.8-1.1
[94] munsell_0.5.0 viridisLite_0.3.0
from mobster.
caravagn
commented on July 3, 2024
Thanks @marcjwilliams1. It does work for me here.
> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.4
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] MCMCpack_1.4-4 MASS_7.3-51.4 coda_0.19-3 mobster_0.1.0 sads_0.4.2 bbmle_1.0.20 ggpubr_0.2.5
[8] magrittr_1.5 easypar_0.2.0 crayon_1.3.4 pio_0.1.0 forcats_0.4.0 stringr_1.4.0 dplyr_0.8.4
[15] purrr_0.3.3 readr_1.3.1 tidyr_1.0.2 tibble_2.1.3 ggplot2_3.2.1 tidyverse_1.3.0
loaded via a namespace (and not attached):
[1] VGAM_1.1-2 colorspace_1.4-1 ggsignif_0.6.0 seqinr_3.6-1 ellipsis_0.3.0
[6] rprojroot_1.3-2 XVector_0.24.0 GenomicRanges_1.36.1 fs_1.3.1 rstudioapi_0.11
[11] farver_2.0.3 MatrixModels_0.4-1 remotes_2.1.1 fansi_0.4.1 lubridate_1.7.4
[16] xml2_1.2.2 codetools_0.2-16 splines_3.6.0 doParallel_1.0.15 pkgload_1.0.2
[21] ade4_1.7-13 jsonlite_1.6.1 Rsamtools_2.0.3 mcmc_0.9-6 packrat_0.5.0
[26] broom_0.5.4 gganimate_1.0.3 dbplyr_1.4.2 compiler_3.6.0 httr_1.4.1
[31] backports_1.1.5 Matrix_1.2-17 assertthat_0.2.1 lazyeval_0.2.2 cli_2.0.1
[36] tweenr_1.0.1 htmltools_0.4.0 quantreg_5.51 prettyunits_1.1.1 tools_3.6.0
[41] gtable_0.3.0 glue_1.3.1 GenomeInfoDbData_1.2.1 Rcpp_1.0.4 cellranger_1.1.0
[46] vctrs_0.2.3 Biostrings_2.52.0 GUILDS_1.3 nlme_3.1-139 iterators_1.0.12
[51] ps_1.3.2 testthat_2.2.1 rvest_0.3.5 lifecycle_0.1.0 devtools_2.2.2
[56] poilog_0.4 zlibbioc_1.30.0 scales_1.1.0 dndscv_0.0.1.0 clisymbols_1.2.0
[61] hms_0.5.3 parallel_3.6.0 SparseM_1.77 memoise_1.1.0 stringi_1.4.6
[66] S4Vectors_0.22.1 desc_1.2.0 foreach_1.4.7 BiocGenerics_0.30.0 pkgbuild_1.0.6
[71] BiocParallel_1.18.1 GenomeInfoDb_1.20.0 rlang_0.4.4 pkgconfig_2.0.3 bitops_1.0-6
[76] lattice_0.20-38 labeling_0.3 htmlwidgets_1.5.1 tidyselect_1.0.0 processx_3.4.2
[81] R6_2.4.1 IRanges_2.18.3 generics_0.0.2 DBI_1.1.0 pillar_1.4.3
[86] haven_2.2.0 withr_2.1.2 RCurl_1.95-4.12 modelr_0.1.6 utf8_1.1.4
[91] plotly_4.9.0 progress_1.2.2 usethis_1.5.1 grid_3.6.0 readxl_1.3.1
[96] data.table_1.12.2 callr_3.4.2 reprex_0.3.0 digest_0.6.25 numDeriv_2016.8-1.1
[101] munsell_0.5.0 viridisLite_0.3.0 sessioninfo_1.1.1
For my packages, it seems we have exactly the same versions...
Me
other attached packages:
[1] MCMCpack_1.4-4 MASS_7.3-51.4 coda_0.19-3 mobster_0.1.0 sads_0.4.2 bbmle_1.0.20 ggpubr_0.2.5
[8] magrittr_1.5 easypar_0.2.0 crayon_1.3.4 pio_0.1.0 forcats_0.4.0 stringr_1.4.0 dplyr_0.8.4
[15] purrr_0.3.3 readr_1.3.1 tidyr_1.0.2 tibble_2.1.3 ggplot2_3.2.1 tidyverse_1.3.0
You
other attached packages:
[1] MCMCpack_1.4-4 MASS_7.3-51.4 coda_0.19-3 mobster_0.1.0
[5] RColorBrewer_1.1-2 peakPick_0.11 sads_0.4.2 bbmle_1.0.23.1
[9] ggpubr_0.2.5 magrittr_1.5 easypar_0.2.0 crayon_1.3.4
[13] pio_0.1.0 forcats_0.5.0 stringr_1.4.0 dplyr_0.8.5
[17] purrr_0.3.3 readr_1.3.1 tidyr_1.0.2 tibble_3.0.0
[21] ggplot2_3.3.0 tidyverse_1.3.0
I will think a bit more offline.
from mobster.
caravagn
commented on July 3, 2024
Can u try to rerun after some crude require(tidyverse)?
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marcjwilliams1
commented on July 3, 2024
fixed
from mobster.
Related Issues (20)
- Portability to R 4.0 HOT 12
- On master R>3.6.0 HOT 1
- Error when running exaples HOT 7
- Input specifications HOT 3
- Improve speed of bootstrap
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- Missing required dependencies HOT 1
- Walk-through Example? HOT 6
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- Strelka2 and Mutect2 inputs HOT 8
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- No Function: squareplot HOT 5
- Error: Error in mobster:::check_input(x, K, samples, init, tail, epsilon, maxIter, : HOT 2
- fit error
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- Missing line in DESCRIPTION file HOT 2
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