Name: Giulio Caravagna
Type: User
Company: University of Trieste
Bio: I run the Cancer Data Science Laboratory (caravagnalab) at the University of Trieste, and this is my personal (caravagn) Github space.
Twitter: gcaravagna
Location: Trieste, Itally
Blog: www.caravagnalab.org
Giulio Caravagna's Projects
Bootstrap-based Learning
Cancer Bioinformatics training session for the Evolutionary Biology and Ecology of Cancer school, Wellcome Trust 2022.
CompBio Classes DSSC 2022
The evoverse is a package to implement cancer evolution analysis on multi-sample cancer sequecing data.
Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
Statistical testing for GBM Margin/ Primary tumours
Genome Data Analytics (DSSC 2021)
Matching models across abstraction levels with Gaussian Processes.
Supplementary Data released with Caravagna et al. Subclonal reconstruction of tumors by using machine learning and population genetics. Nature Genetics volume 52, 898–907(2020).
Mutation tree from binary bulk sequencing data
Pretty I/O output to the console
C utilities for the programming classes at units.
Data released with the REVOLVER package, example vignettes and case studies.
Slides and code for the SEMM Advanced Bioinformatics Workshop (October 2020)