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nbokulich avatar nbokulich commented on September 14, 2024

The raw data have been updated to correct this issue, and new links are now available in dataset-metadata.tsv

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mdeleeuw avatar mdeleeuw commented on September 14, 2024

The index reads lack the barcode sequence in the fastq header. The following command is required prior to calling join_paired_ends.py and/or split_libraries_fastq.py

gunzip -c mock-index-read.fastq.gz | paste - - - - | awk '{print $1" "$2$3 ; print $3; print $4; print $5}' | gzip -c > mock-index-read.corrected.fastq.gz

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nbokulich avatar nbokulich commented on September 14, 2024

Thank you, @mdeleeuw. I will add your comments here and on this issue to the README.md pages for these datasets. I have added these README.md files, located in the home directory for each dataset, to list notes on each dataset and share tips for using the data. Your input has helped guide the creation of these files.

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