Comments (2)
Alas, we currently only have marker-gene sequencing datasets in mockrobiota, though we plan to host shotgun WGS metagenome datasets in the future and are actively searching for these. I will keep this issue open until that happens βΒ at which point you will be notified via this issue request. In the mean time, if you use any mock metagenome datasets and would like to contribute these to mockrobiota, your help would be hugely appreciated!
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@davidvilanova we now have our first shotgun metagenome mock community, mock-17. It is MiSeq, but perhaps still useful to you?
Note βΒ I have not tested this mock community personally, but you can find more information on this mock community in the original publication, doi:10.1128/AEM.01043-13.
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Related Issues (20)
- Permanent "issues" or notes pages for each mock community dataset HOT 4
- Automatic taxonomy string extraction
- Update required metadata
- Unable to replicate community composition of Mock-3 HOT 3
- new data integrity checks HOT 5
- split_libraries_fastq.py error with golay barcodes (mock-5 & -7) HOT 8
- Potential issue demultiplexing mock-8 HOT 2
- Failing to demultiplex mock-3 HOT 3
- Error preprocessing mock 7 and 8 : Failed qual conversion HOT 1
- Question about barcode length in mock2 and mock6 HOT 1
- Demultiplexing Reverse Reads HOT 5
- CONTRIBUTING.md not found HOT 1
- Trouble generating a pull request HOT 3
- add accuracy data and recommendations for mock communities on README
- Mock2 expected abundance replication issue HOT 4
- replace QIIME 1 commands with QIIME 2 commands
- Mock 11 primers HOT 1
- Is Mock-1 HiSeq or MiSeq? HOT 2
- How can I distinguish those three mock communities from Mock-10 data? HOT 2
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