Comments (2)
brentp
commented on July 30, 2024
Hi Xavier, I agree this would be useful and it is suggested in another open issue. I just haven't had the time to implement. I'll try to get to it soon.
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xsoleacha
commented on July 30, 2024
Dear Brent,
thank you for your quick reply and for your efforts maintaining the tool. It is very useful for us!!
Best regards,
Xavi.
from mosdepth.
Related Issues (20)
- Fragment length filtering
- MAPQ 0 reads discarded even if --mapq 0 used HOT 2
- Empty per-base output file if all reads in input BAM are unmapped HOT 5
- Insert size of 0 HOT 1
- sequencing depth after deduplication HOT 4
- Can I get the two result at the same time?
- Summary output with --use-median
- Write out mean/median mapq HOT 1
- Warnings about invalid chromosome intervals .
- Support for CRAM v3.1 HOT 5
- [question]: mosdepth 0.3.7 via bioconda/docker
- addition of min and max counts to prefix.regions.bed.gz
- Soft and hard clipped bases HOT 7
- Long run time with large assembly and many contigs HOT 9
- `:` in region strings passed to `--chrom`
- Unspecific naming of region in summary file HOT 2
- D4 support in versions 0.3.7 and 0.3.8 HOT 1
- feat: per base in BED regions only? HOT 3
- Differences in WES Coverage Values (Mosdepth Versions 0.3.3 and 0.3.8) HOT 2
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