Hi Pucker,
Thanks for this tool,
I was wondering, how log does it take it to complete a tetraploid plant genome with 120,000 genes?
My job with 32 cores has been running for almost 24 days and is yet to be completed.
It seems RAxML_tree.raxml construction takes longer, do you have any suggestions to get this sooner?
I'm currently at the - RAxML_tree.raxml.ckp and RESULTS/01_initial_candidates.pep.fasta completed sofar.
#---------cmd used------------------ python3 ${myb_path}/MYB_annotator.py \ --baits ${myb_path}/MYB_baits.fasta \ --info ${myb_path}/MYB_baits.txt \ --subject Bnapus_1N99.pep_20220722.fasta \ --cpu $NSLOTS \ --mode raxml \ --refmybs ${myb_path}/AthRefMYBs.txt \ --raxml /home/sap223/anaconda3/envs/myb/bin/raxml-ng \ --out ${out_dir}
Thanks for your help,
sam