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autodock-vina

AutoDock Vina

barley_heat_tolerance

chickpea_paper

chromekeepass

Chrome extensions for automatically filling credentials from KeePass/KeeWeb

cnvnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

docker-builds

A collection of useful Docker builds

genespace

genespace_data

pangenome_comparative_genome_synteny

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

hpt2_study

kalign

A fast multiple sequence alignment program.

lecture_data_visulization

liftoff

An accurate GFF3/GTF lift over pipeline

linux-bash-commands

:godmode: Ultimate list of Linux bash commands

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

myb_annotator

This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.

mytools_usage

orthofinder

Phylogenetic orthology inference for comparative genomics

paraat

pggb

the pangenome graph builder

protein_modelling

From_public

rna-combine

RNA-seq data comprehensive data analysis toolbox

setup_nimbus_cluster

speedppi

Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning

statannotations-tutorials

In this tutorial, we go over the features of statannotations

tpmcalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

transposonultimate

TransposonUltimate - a holistic set of tools for transposon identification

variant-calling-pipeline-gatk4

Variant Calling Pipeline Using GATK4 and Nextflow

wgcna

yongjia_gatk4