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gostats's Issues

probeSetSummary: "incorrect number of dimensions"

Dear GOstats team,

I am running a gene ontology enrichment analysis as follows:

params <- new("GOHyperGParams", geneIds = target_entrez, 
              universeGeneIds = universe_entrez, annotation = "org.Hs.eg.db",
              ontology = "BP", pvalueCutoff = 1, 
              conditional = TRUE, testDirection = "over")
hgOver_gt <- hyperGTest(params)
go_results <- summary(hgOver_gt)

Which yields a nice data frame with the enriched GO terms. Now, I want to know which genes in my target list are found in each enriched term:

probeSetSummary(hgOver_gt)

But I get the following error:

Error in `[.default`(tab, , 1) : incorrect number of dimensions

I'm not sure if this is a bug or I am doing something wrong. I would be most grateful if you could shed some light into the matter.

Best

Ramon

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