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License: MIT License
CONGA: COpy Number Genotyping in Ancient genomes and low-coverage sequencing data
License: MIT License
Hi, I'm getting a segmentation fault when trying to run CONGA.
This is the command I used:
~/programs/CONGA/conga --input ${id}.bam--out ${id}_conga --ref /Reference_Genomes/hs37d5/hs37d5.fa --sonic human_g1k_v37.sonic --dels 1kGP_SV_del.Phase3.AFR_seg.bed --dups 1kGP_SV_dup.Phase3.AFR_seg.bed --mappability EncodeCrgMapabilityAlign100mer.bed
It crashes when calculating likelihoods; when I run addr2line, this is where it points to:
addr2line -e ~/programs/CONGA/conga 000000000040737d
/home/iseult/programs/CONGA/likelihood.c:120
I downloaded CONGA on 5th April, and the version I'm using is 0.1
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