arcolombo Goto Github PK

followers: 2.0 following: 0.0 repos: 90.0 gists: 1.0

Name: Anthony R. Colombo

Type: User

Company: RamsinghLab Keck Hematology

Bio: daydreamer.

Location: Los Angeles

Blog: https://arcolombo.wordpress.com/

Anthony R. Colombo's Projects

post-gwas-pipeline

A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/qusage.html Contributions: http://clip.med.yale.edu/qusage. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=qusage.

r-to-armadillo

Converting base R code to Armadillo code for use with RcppArmadillo or for external programs (e.g. Matlab, Mathematica, ...)

r-travis

Tools for using R with Travis (http://travis-ci.org) in lieu of a website:

ractip

RNA-RNA interaction prediction by integer programming

rccdashboard

a devel branch off erccdashboard, but avoiding namespace conflicts

rcpparmadillo

Rcpp integration for Armadillo templated linear algebra library

rcrdiff

Repository from original manuscript fork

repdblite.hsapiens.2012

Suggested package for arkas, repDbLite support

repeatomegrch38

repo for GrCh38 repeatome, used for Artemis

repenrich

RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.

riblast

RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis

rtoolkit

This is an rToolKit

science-git

For the workshop

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.