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i.ann.maskrcnn

Mask R-CNN in GRASS GIS

ilastik

ilastik-shell, applets, and workflows to string them together.

imacyte

ImaCytE is an interactive tool for data-driven exploration of Imaging Mass Cytometry data as presented in the paper "ImaCytE: Visual Exploration of Cellular Micro-environments for Imaging Mass Cytometry Data".

imc_denoise

IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications

imcexperiment

Container data for cytometry experiment

imcsegmentationpipeline

A pixel classification based multiplexed image segmentation pipeline

imctools

Tools to handle IMC data

imcyto

Image Mass Cytometry analysis pipeline

junk

Edits to qusage to increase speed and efficiency

keckuschematology

Analyses, reports, and various unpublished works

lambdacrypt

Haskell RSA keygen/encryption/decryption program with a GTK3 frontend

lasv

laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datasets

linear-algebra

These are selected problems from Friedbergy's 4th edition of Linear Algebra for undergraduates

locuszoom-standalone

Create regional association plots from GWAS or meta-analysis

machine_learning

This is a repo for Andrew Ng's Machine Learning Course

maftools

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

maui

GUI for low-level analysis of MIBI data

metakallisto

Using kallisto for metagenomic analysis

mibianalysis

Low level analysis for MIBI images

mwt

mymission

This is a personal statement of my mission regarding enlisting in the path for solving cancer

nanonormiter

Pre-processing of NanoString normalization data, as described in "An approach for normalization and quality control for NanoString RNA expression data" (Bhattacharya and Hamilton et al, 2020)

nanor

R package for analysis of NanoString data

neighbourhood

Adds an R implementation for the HistoCAT neightbourhood analysis that runs from CellProfiler output.

neubias_academy_stardist

nucseq

A multi-threaded nucleosome positioning analysis package based mainly on shell and perl scripts.

octave

my octave exercises for 2011 stanford machine learning class, posted after the due date of course

pileometh

A (mostly) universal methylation extractor for BS-seq experiments.

polygenicadaptationcode

pong

Fast analysis and visualization of latent clusters in population genetic data