arcolombo Goto Github PK

alra

Imputation method for scRNA-seq based on low-rank approximation

arkas

This is the kallisto package

arkas-rnaseq

Arkas RNAseq workflow corresponding to Illumina's BaseSpace Cloud Pipeline

arkasdata

staging area for building arkasData

bayesian-dm-code-examples

BDM Code examples from Win/OpenBUGS, CARBayes and INLA

bda-gelman

Bayesian Data Analysis Andrew Gelman independent study

biscuit

a little tool for bisulfite data

blog-reference-functions

These are functions which I have used on my blog at tonybreyal.wordpress.com

bwa-meth

align BS-Seq reads and extract methylation without intermediate temp files

cbcs_normalization

Code and summary results for "Best practices for normalization of Nanostring nCounter gene expression cohorts"

cellprofiler

An open-source application for biological image analysis

cellprofiler-analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

cellprofiler-plugins

Community-contributed and experimental CellProfiler modules.

chromhmm

chromophobe

a package to handle ChromHMM (http://compbio.mit.edu/ChromHMM/) and similar segmentation models in R

cqn

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cqn.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cqn.

curriculum

Recommended background for new lab members.

cytofworkflow

deepcell-tf

Deep Learning Library for Single Cell Analysis

dismapbook

Annex online Material for the CRC book: "Disease mapping: from foundations to multidimensional modeling"

docker-squash

Squash docker images to make them smaller

erccdashboard

This is a read-only mirror of the Bioconductor SVN repository. Contributions: http://www.nist.gov/mml/bbd/erccdashboard.cfm, https://github.com/usnistgov/erccdashboard, http://tinyurl.com/erccsrm. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=erccdashboard. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/erccdashboard

esfunctions

Repository for Dr. Asgharzadeh

gdc-client

GDC Data Transfer Tool

getting-started-with-stan

The repository for Happy Scientist Seminar: Getting Started with Stan

giotto

Single-cell spatial analysis pipeline

hands-on-convolutional-neural-networks-with-tensorflow

Hands-on Convolutional Neural Networks with Tensorflow, published by Packt

harvard-compbio

Dr. Shirley Liu's Computational Biology course work

hgdp_popstruct_exercise

A classroom exercise using HGDP SNP data to introduce population structure concepts

histocat

Histology Topography Cytometry Analysis Toolbox