Comments (1)
It appears you have an error in the vcf file. I wrote a rough tool to check vcfs usable_vcf. Running it over your output_s5.vcf.gz
shows the attached errors. To start, your REF_strand
INFO field is defined as having Number=2
, but each occurrence appears to only have a single item. See the vcf specification for details. There are other errors I'll leave to you to resolve.
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Related Issues (20)
- Extend giab_report.txt with more SV types sorted by size HOT 1
- CNV call is categorized as FP eventhough it overlaps groundtruth CNV of the same CNV type HOT 1
- truvari anno trf duplicates variants HOT 1
- Clarification of the output (fp.vcf) and the FP field in the summary.txt HOT 2
- Clarification needed over the summary.txt file HOT 3
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- A quick query about correlation HOT 1
- Please update collapse wiki HOT 1
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- query about VCF bed intersection HOT 2
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