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ACEnglish avatar ACEnglish commented on August 24, 2024

This is a very old version which I didn't even release onto conda. I'm unfamiliar with conda and had help getting the newer versions auto-deployed onto bioconda, so I'm not sure what's happening here.

But digging in a little bit, I can see that v3.4 is out there:
https://anaconda.org/bioconda/truvari

And it looks like the v0.1.* (which, again, I didn't make) is somehow considered the latest version? https://anaconda.org/bioconda/truvari/labels

Did you install off the main label instead of this old/unsupported one? e.g. conda install -c bioconda truvari and not conda install -c bioconda/label/cf201901 truvari?

from truvari.

tdelhomme avatar tdelhomme commented on August 24, 2024

I used conda install -c bioconda truvari, would you suggest to install it not using conda?

from truvari.

tdelhomme avatar tdelhomme commented on August 24, 2024

Installing into a conda environment using the latest version works correctly on the same files, I think the conda version is obselete. Could you mention it in the documentation for other users? thanks!
Here are the commands that can be used to create the environment:

# create and go inside the environment
conda create --name truvari python=3.9
conda activate truvari

# install last stable truvari and run a test
python3 -m pip install truvari
truvari -b PAM56393_1_0_sort.vcf.gz -c PAM56393_1_0_sort.vcf.gz -f hg38.fa -o test_output_dir

# go outside the environment 
conda deactivate truvary

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ACEnglish avatar ACEnglish commented on August 24, 2024

Thanks for following up on this. I've referenced your comment in updated documentation on the wiki. When I get time, I'll try to figure out how to sort out the old release on conda.

from truvari.

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