Comments (4)
This is a very old version which I didn't even release onto conda. I'm unfamiliar with conda and had help getting the newer versions auto-deployed onto bioconda, so I'm not sure what's happening here.
But digging in a little bit, I can see that v3.4 is out there:
https://anaconda.org/bioconda/truvari
And it looks like the v0.1.* (which, again, I didn't make) is somehow considered the latest version? https://anaconda.org/bioconda/truvari/labels
Did you install off the main label instead of this old/unsupported one? e.g. conda install -c bioconda truvari
and not conda install -c bioconda/label/cf201901 truvari
?
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I used conda install -c bioconda truvari
, would you suggest to install it not using conda?
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Installing into a conda environment using the latest version works correctly on the same files, I think the conda version is obselete. Could you mention it in the documentation for other users? thanks!
Here are the commands that can be used to create the environment:
# create and go inside the environment
conda create --name truvari python=3.9
conda activate truvari
# install last stable truvari and run a test
python3 -m pip install truvari
truvari -b PAM56393_1_0_sort.vcf.gz -c PAM56393_1_0_sort.vcf.gz -f hg38.fa -o test_output_dir
# go outside the environment
conda deactivate truvary
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Thanks for following up on this. I've referenced your comment in updated documentation on the wiki. When I get time, I'll try to figure out how to sort out the old release on conda.
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Related Issues (20)
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