Comments (2)
And also it seems that there are no model_mapping
, load_adam_optimizer_and_scheduler
in src.models
, I think it should be from src.benchmark.models import model_mapping, load_adam_optimizer_and_scheduler
in run_downstream.py
line 8 instead of from src.models import model_mapping, load_adam_optimizer_and_scheduler
from ontoprotein.
Hi, thanks for your interest in our work!
This is our negligence when merging the code of benchmark
into the original code of pre-training model. We will fix the error.
For the above error about transformers.deepspeed
, you could update the version of transformers
and install the library deepspeed
.
from ontoprotein.
Related Issues (20)
- ontoProtein pretrained model HOT 4
- the problem of biopython version? HOT 1
- 关于GO的embedding HOT 1
- 请问是否有和ESM-1b的benchmark结果 HOT 1
- 关于GO prediction的表现 HOT 1
- Graph knowledge creation HOT 1
- Trainer problem for pre-training HOT 2
- [Confirmation] Optimal Hyperparameters and Reproducibility HOT 19
- ImportError in deepspeed.py HOT 2
- What is the `OntoModel` referenced in `run_pretrain.sh` HOT 1
- Question about computing resource and batch size HOT 4
- Rationale for choosing this loss function HOT 2
- Exploding KE loss when training a new `protein-go` set HOT 1
- Go-Go relations are the same as Protein-Go relations? HOT 5
- Inconsistent data statistics between the downloaded dataset and the reported statistics HOT 2
- Running Code in Google Colab HOT 14
- Generating Embedding of Protein Sequence HOT 11
- Question: What is the evaluation metric for protein function classification? HOT 2
- Important relation for the protein sequence HOT 3
- Question: Is it possible get the embedding of the relations and entities separately using Ontoprotein ? HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from ontoprotein.