Comments (2)
Hi,
We use evaluation metric F1 max
for protein function prediction, which have been used in CAFA.
from ontoprotein.
hi, do you have further questions?
from ontoprotein.
Related Issues (20)
- ontoProtein pretrained model HOT 4
- the problem of biopython version? HOT 1
- 关于GO的embedding HOT 1
- 请问是否有和ESM-1b的benchmark结果 HOT 1
- 关于GO prediction的表现 HOT 1
- Graph knowledge creation HOT 1
- Trainer problem for pre-training HOT 2
- [Confirmation] Optimal Hyperparameters and Reproducibility HOT 19
- ImportError in deepspeed.py HOT 2
- What is the `OntoModel` referenced in `run_pretrain.sh` HOT 1
- Question about computing resource and batch size HOT 4
- Rationale for choosing this loss function HOT 2
- Exploding KE loss when training a new `protein-go` set HOT 1
- Go-Go relations are the same as Protein-Go relations? HOT 5
- Inconsistent data statistics between the downloaded dataset and the reported statistics HOT 2
- Running Code in Google Colab HOT 14
- Generating Embedding of Protein Sequence HOT 11
- Important relation for the protein sequence HOT 3
- Question: Is it possible get the embedding of the relations and entities separately using Ontoprotein ? HOT 2
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from ontoprotein.