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zijiewu3's Projects

atomai icon atomai

Deep and Machine Learning for Microscopy

foyer icon foyer

A package for atom-typing as well as applying and disseminating forcefields

gmso icon gmso

Flexible storage of chemical topology for molecular simulation

mbuild icon mbuild

A hierarchical, component based molecule builder

mbuild_ona icon mbuild_ona

A preliminary implementation of the ONA model (Ghobadi and Jayaraman, Soft Matter, 2016, 12, 2276) on MoSDeF platform (https://mosdef.org).

mosdef-workflows icon mosdef-workflows

Sample molecular simulation workflows using a MoSDeF and community tools

pyronchigram icon pyronchigram

Simple Ronchigram and Phase Plate Simulator for training aide and understanding aberration corrected TEM and STEM

pyswarms icon pyswarms

A research toolkit for particle swarm optimization in Python

pytemlib icon pytemlib

TEM data quantification library through a model-based approach

stemtool icon stemtool

A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality

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