yuzhimanhua / seetopic Goto Github PK

How to get topics by documents thru this algo? I can find keywords by topics, but how to get which topic or topics belongs to which document?

(SeeTopic) PS D:\SeeTopic> sh ./seetopic.sh ===Get PLM Embeddings=== 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 55902/55902 [06:34<00:00, 141.74it/s] ===Iter 0: PLM Module=== ===Iter 1: PLM Module=== ===Iter 1: Local Module=== make: 'cate' is up to date. ./run_local.sh: line 15: ./src/cate: cannot execute binary file: Exec format error Traceback (most recent call last): File "D:\SeeTopic\seed_guided_emb\get_local_nn.py", line 21, in <module> with open(f'{dataset}_{num_iter}/emb_cate_w.txt') as fin: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: 'scidocs_1/emb_cate_w.txt' ===Iter 1: Ensemble=== Traceback (most recent call last): File "ensemble.py", line 24, in <module> with open(f'{dataset}/keywords_{model}_{num_iter}.txt') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'scidocs/keywords_local_2.txt' ===Iter 2: PLM Module=== Traceback (most recent call last): File "get_bert_nn.py", line 17, in <module> with open(f'{dataset}/keywords_{num_iter}.txt') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'scidocs/keywords_2.txt' ===Iter 2: Local Module=== make: 'cate' is up to date. Traceback (most recent call last): File "D:\SeeTopic\seed_guided_emb\prepare.py", line 12, in <module> with open(f'../{dataset}/keywords_{num_iter}.txt') as fin, open(f'{dataset}_{num_iter}/keywords.txt', 'w') as fout: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '../scidocs/keywords_2.txt' ./run_local.sh: line 15: ./src/cate: cannot execute binary file: Exec format error Traceback (most recent call last): File "D:\SeeTopic\seed_guided_emb\get_local_nn.py", line 15, in <module> with open(f'../{dataset}/keywords_{num_iter}.txt') as fin: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '../scidocs/keywords_2.txt' ===Iter 2: Ensemble=== Traceback (most recent call last): File "ensemble.py", line 24, in <module> with open(f'{dataset}/keywords_{model}_{num_iter}.txt') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'scidocs/keywords_biobert_3.txt' ===Iter 3: PLM Module=== Traceback (most recent call last): File "get_bert_nn.py", line 17, in <module> with open(f'{dataset}/keywords_{num_iter}.txt') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'scidocs/keywords_3.txt' ===Iter 3: Local Module=== make: 'cate' is up to date. Traceback (most recent call last): File "D:\SeeTopic\seed_guided_emb\prepare.py", line 12, in <module> with open(f'../{dataset}/keywords_{num_iter}.txt') as fin, open(f'{dataset}_{num_iter}/keywords.txt', 'w') as fout: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '../scidocs/keywords_3.txt' ./run_local.sh: line 15: ./src/cate: cannot execute binary file: Exec format error Traceback (most recent call last): File "D:\SeeTopic\seed_guided_emb\get_local_nn.py", line 15, in <module> with open(f'../{dataset}/keywords_{num_iter}.txt') as fin: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '../scidocs/keywords_3.txt' ===Iter 3: Ensemble=== Traceback (most recent call last): File "ensemble.py", line 24, in <module> with open(f'{dataset}/keywords_{model}_{num_iter}.txt') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'scidocs/keywords_biobert_4.txt' ===Iter 4: PLM Module=== Traceback (most recent call last): File "get_bert_nn.py", line 17, in <module> with open(f'{dataset}/keywords_{num_iter}.txt') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'scidocs/keywords_4.txt' ===Iter 4: Local Module=== make: 'cate' is up to date. Traceback (most recent call last): File "D:\SeeTopic\seed_guided_emb\prepare.py", line 12, in <module> with open(f'../{dataset}/keywords_{num_iter}.txt') as fin, open(f'{dataset}_{num_iter}/keywords.txt', 'w') as fout: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '../scidocs/keywords_4.txt' ./run_local.sh: line 15: ./src/cate: cannot execute binary file: Exec format error Traceback (most recent call last): File "D:\SeeTopic\seed_guided_emb\get_local_nn.py", line 15, in <module> with open(f'../{dataset}/keywords_{num_iter}.txt') as fin: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '../scidocs/keywords_4.txt' ===Iter 4: Ensemble=== Traceback (most recent call last): File "ensemble.py", line 24, in <module> with open(f'{dataset}/keywords_{model}_{num_iter}.txt') as fin: FileNotFoundError: [Errno 2] No such file or directory: 'scidocs/keywords_biobert_5.txt' cp: cannot stat 'scidocs/keywords_5.txt': No such file or directory