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bioinfoproject's Introduction

Project

目标

设计一个模型,做到输入一个蛋白质序列,从/data/pdb这个文件中查找到尽可能相似的12个蛋白质序列。

文件

query.fasta: 评价模型性能使用的1024个输入序列数据
TMalign: 评价输入序列和查找到的12个序列的相似性的程序
train.py: 训练脚本
test.py: 测试脚本
pdb/: 供搜索的数据库,共107160个蛋白质
其他文件可以自己加

工程结构

data/:数据处理、数据加载相关代码。
model/:网络模型。
loss/:训练用损失函数。
ckpt/:保存的模型参数。已经设置了gitignore所以git push时不会传到仓库。

bioinfoproject's People

Contributors

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Watchers

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