Giter Club home page Giter Club logo

csdap's Introduction

Computer Simulation Data Analysis Package (CSDAP)

This package is designed for who is interested in analyzing the snapshots from molecular dynamics simulations, i.e. by LAMMPS , Hoomd-blue et al. It is flexible for other computer simulations as long as you change the method of reading coordinates to suitable formats in 'dump.py'. The modules in the package are written in Python3 by importing some high-efficiency modules like Numpy and Pandas. I strongly recommend the user to install Anaconda3 or/and VS Code, or Sublime Text 3.

To use the package efficiently, one intelligent way is to write a python script by importing desired modules and functions. In this way, all results can be obtained in sequence with suitable settings.

The package is distributed in the hope that it will be helpful, but WITHOUT ANY WARRANTY. Although the codes were benchmarked when developed, the users are responsible for the correctness.

A detailed manual is provided in the corresponding Github-Wiki. To modifty the math written by Latex, the editor typora is recommended and the extension 'MathJax Plugin for Github' for Google Chrome is required to show the equations correctly online.

A pdf version of the manual is also available from doc.

csdap's People

Contributors

yuanchaohu avatar

Stargazers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

Watchers

 avatar

csdap's Issues

Problem with file reading

Hi there, seems like there is a bug with your implementation of file reading.
Here is how you can reproduce the problem:
Set a water molecule for md simutions
and use dummp file of only oxygen via grouping.
Your program will not be able to read when the maximum id exceeds the # of particles.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.