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License: GNU General Public License v3.0
This project forked from mritchielab/flames
License: GNU General Public License v3.0
create_config package:FLAMES R Documentation
Create Configuration File From Arguments
Description:
Create Configuration File From Arguments
Usage:
create_config(outdir, type = "sc_3end", ...)
Arguments:
outdir: the destination directory for the configuratio nfile
type: use an example config, available values:
• "sc_3end" - config for 10x 3' end ONT reads
• "SIRV" - config for the SIRV example reads
...: Configuration parameters.
• do_genome_align - Boolean. Specifies whether to run the
genome alignment step. 'TRUE' is recommended
• do_isoform_id - Boolean. Specifies whether to run the
isoform identification step. 'TRUE' is recommended
...
Users could still use the function to generate a configuration file. However, only the outdir
and type
arguments are in effect. To modify other options, users have to edit the configuration file generated manually.
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