Hello, I have a brief question regarding the input data for this repo, and I hope it is alright to ask here.
gene_count_B+F_non_q20_rebase.csv
gene_count_B+F_q20_rebase.csv
trans_count_B+F_non_q20_rebase.csv
trans_count_B+F_q20_rebase.csv
#vs
gene_count_B+F_non_q20.csv
gene_count_B+F_q20.csv
trans_count_B+F_non_q20.csv
trans_count_B+F_q20.csv
I have noticed that this is only present for the GridION samples, and not PromithIon. I only ask since one of the scripts (UMAP) plots imports the files with rebase
, while the marker gene analysis, imports the ones without it. The only reference I could find to "rebase" is the rebasecalled process in the paper, however, this was only performed to the scmixology dataset according to the methods. Any clarifications is appreciated. Thanks!