Giter Club home page Giter Club logo

go-enrichment-analysis-demo's Introduction

Hi there 👋

Welcome to my GitHub profile!

R Packages

NGS Tutorials

Misc.

  • Create a GitHub Pages site for your repository
  • Create stacked violin plots from Seurat, SingleCellExperiment and data.frame objects
  • Gallery showcasing Pandoc syntax highlight styles before and after version 2.11
  • Short examples of using R in data analysis and visualisation
    • National survey
      • Deaths registered monthly in England and Wales
      • COVID-19 Vaccination Statistics in England
    • Gene expression
      • Visualise differential expression analysis results with MA plot
      • Normalisation of bulk RNA-seq counts
      • Plot ligand-receptor expression on UMAP and t-SNE projection
    • Others
      • Visualise interaction between 2 variables with parallel sets diagrams
      • Testing of the Spatial Image Analysis of Tissues (SPIAT) R package

go-enrichment-analysis-demo's People

Contributors

ycl6 avatar

Watchers

avatar avatar

go-enrichment-analysis-demo's Issues

Need to update packages in the guide

  • Need to update packages in the guide to latest available versions, and use Bioconductor 3.12
  • The enrichR is now v3.0 and has now incoporated the plotEnrich and printEnrich functions
  • Homepage is missing the installation instruction for enrichR

could not find function "enrichment_barplot"

Hello,

I'm trying to make a bar plot of the enriched go terms as shown in https://ycl6.github.io/GO-Enrichment-Analysis-Demo/2_topGO.html but it's not working.

I have tried installing the github version which should have the enrichment_barplot function but it's still not working. Any advice?

devtools::install_github("ycl6/topGO-feat", ref = "v2.41.0-barplot", force = TRUE)
library(topGO)
png(paste0(outTitle, "_up.png"), width = 8, height = 6, units = "in", res = 300)
enrichment_barplot(up_GOdata, up_Res, showTerms = 20, numChar = 50, orderBy = "Scores",
title = paste0("GO-", ontology," ORA of up-regulated genes"))
invisible(dev.off())

Error in enrichment_barplot(up_GOdata, up_Res, showTerms = 20, numChar = 50, :
could not find function "enrichment_barplot"

Thank you,

Marcela

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.