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Xiaoyong Pan's Projects

retain icon retain

RETAIN: Interpretable Predictive Model in Healthcare using Reverse Time Attention Mechanism

rna-seq-diff-exprn icon rna-seq-diff-exprn

RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).

scikit-optimize icon scikit-optimize

Sequential model-based optimization with a `scipy.optimize` interface

scikit-plot icon scikit-plot

An intuitive library to add plotting functionality to scikit-learn objects.

sequence_gan icon sequence_gan

Generative adversarial networks (GAN) applied to sequential data via recurrent neural networks (RNN).

seya icon seya

Bringing up some extra Cosmo to Keras.

skflow icon skflow

Simplified interface for TensorFlow (mimicking Scikit Learn)

smile icon smile

Statistical Machine Intelligence & Learning Engine

smilecnn icon smilecnn

Smile detection with a deep convolutional neural net, with Keras.

spearmint icon spearmint

Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams. Advances in Neural Information Processing Systems, 2012

stamp icon stamp

STAMP is a tool for characterizing similarities between transcription factor binding motifs.

stochastic_depth_keras icon stochastic_depth_keras

Rewriting code for "Deep Networks with Stochastic Depth" http://arxiv.org/abs/1603.09382 in keras

tensorflow icon tensorflow

Computation using data flow graphs for scalable machine learning

tensorflow-book icon tensorflow-book

Accompanying source code for Machine Learning with TensorFlow. Refer to the book for step-by-step explanations.

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